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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99667488_99668908_R

Intron Information:

Intron Rank:
100
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99667488 - 99668908
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
TCTTTCTTACAG
Flanking Amino Acid:
FVVLDNPNSRDSILDIKVPI
Intron Amino Acid Position:
5487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
92.1
0.95
0.6
87.5
22.9
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
56.9
0.08
1.8
63.72
44.3

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685