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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99670907_99671851_R

Intron Information:

Intron Rank:
98
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99670907 - 99671851
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCAAG
5'SS Class:
major
3'SS Sequence:
GTTTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCTTATGT
Flanking Amino Acid:
FQQKKTKIAQFLESSSSMFA
Intron Amino Acid Position:
5418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
43.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.4
0.82
0.7
81.2
30.8
Minor 5ss
37.7
-1.4
3.1
47.9
47.8
Minor BPS
57.8
0.32
1.9
80.04
42.1

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685