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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99672128_99672782_R

Intron Information:

Intron Rank:
96
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99672128 - 99672782
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGATTTAACT
Flanking Amino Acid:
SSMIDNHSKQLAYESLAVIG
Intron Amino Acid Position:
5355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.7
0.76
0.7
78.7
26.9
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
72.2
0.78
1.6
88.66
36.3

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685