About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99672958_99673570_R

Intron Information:

Intron Rank:
95
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99672958 - 99673570
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTAACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTTCTTAACT
Flanking Amino Acid:
ILEPTQAAKLKGDYRTGKRL
Intron Amino Acid Position:
5296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
81.7
0.71
0.8
78
35
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
87.9
1.27
0.9
95.32
31.5

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685