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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99674738_99676529_R

Intron Information:

Intron Rank:
93
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99674738 - 99676529
Intron Length:
1792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
ACTACACTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TGTCTCATAAAT
Flanking Amino Acid:
AHQFLTDTSQHIVRDPEELR
Intron Amino Acid Position:
5228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
66.2
0.37
0.9
55.8
39.6
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
56.6
0.29
1.7
76.72
38.9

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685