About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99678938_99679133_R

Intron Information:

Intron Rank:
90
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99678938 - 99679133
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCATCTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATGGTGTTAATT
Flanking Amino Acid:
SEKQSRKNTQSFKRKPGQAD
Intron Amino Acid Position:
5051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.2
67.4
43.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
97
1.06
0.5
96.7
11.4
Minor 5ss
34.8
-1.7
3.3
50.9
45.4
Minor BPS
49.6
0.05
2.1
69.02
42.9

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685