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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99679236_99679586_R

Intron Information:

Intron Rank:
89
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99679236 - 99679586
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTGCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTCAGTTACA
Flanking Amino Acid:
EASEKDQSKEEYGSGAASAN
Intron Amino Acid Position:
5017

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
65.8
0.36
1
61.8
44.4
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
49.7
-0
2.5
76.76
39.9

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685