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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99680311_99680902_R

Intron Information:

Intron Rank:
87
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99680311 - 99680902
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGGTA
5'SS Class:
major
3'SS Sequence:
CTTTTTAATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTCTGACTT
Flanking Amino Acid:
DEKSDDEEKEEEENTFEIDD
Intron Amino Acid Position:
4852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
71.6
33.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.4
0.73
0.9
78.2
33.8
Minor 5ss
26.7
-2.7
3.6
37.1
47.5
Minor BPS
57.7
0.32
1.7
77.06
39.7

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685