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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99681123_99682092_R

Intron Information:

Intron Rank:
86
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99681123 - 99682092
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTACTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTTTGTGTACT
Flanking Amino Acid:
TEETGPGMDENSLVAYFSSL
Intron Amino Acid Position:
4779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
65.3
0.34
1.1
64.7
40.6
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
48.8
-0
2.4
80.3
41.5

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685