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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99682269_99683153_R

Intron Information:

Intron Rank:
85
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
99682269 - 99683153
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGTTC
5'SS Class:
major
3'SS Sequence:
GAACTGTACACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTCTCTGAACT
Flanking Amino Acid:
KMHDGEQEKKENDEKSDEEE
Intron Amino Acid Position:
4720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.2
67.7
38.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
57.6
0.17
1.1
49.9
42.6
Minor 5ss
43.7
-0.7
3
59.1
45.8
Minor BPS
67.9
0.64
1.5
82.07
39.1

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685