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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99684699_99685075_R

Intron Information:

Intron Rank:
82
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99684699 - 99685075
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTTTTTTAACT
Flanking Amino Acid:
GEDYTSDKHKFFNQSCYLLV
Intron Amino Acid Position:
4573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.7
0.78
0.8
79.3
32.8
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685