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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99686197_99686646_R

Intron Information:

Intron Rank:
79
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99686197 - 99686646
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TTTCTTCTATCA
Flanking Amino Acid:
QQSHENLFYSWRDFEVCTSA
Intron Amino Acid Position:
4390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
82.2
0.73
0.9
76.8
37
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
49.4
-0
1.9
68.93
37.4

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685