About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99687133_99688356_R

Intron Information:

Intron Rank:
78
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99687133 - 99688356
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTGC
5'SS Class:
major
3'SS Sequence:
TCTTCCTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTCTTCCTAACC
Flanking Amino Acid:
TALTEQWITLRSLLSSIQEM
Intron Amino Acid Position:
4228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67.7
38.4
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
73.1
0.52
0.9
67.1
38.2
Minor 5ss
46.7
-0.3
2.5
62.1
42.5
Minor BPS
68.6
0.56
1.7
78.65
37

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685