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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99688473_99689649_R

Intron Information:

Intron Rank:
77
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99688473 - 99689649
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TTCTCCGCACTT
Flanking Amino Acid:
LQTALLAPAKDLGLGSIERC
Intron Amino Acid Position:
4190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
71.3
0.53
1
61.3
37
Major PPT
90.1
0.9
0.7
89.2
27.5
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
46.3
-0.2
2.4
71.5
46

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685