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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99691493_99691656_R

Intron Information:

Intron Rank:
74
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99691493 - 99691656
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CATATTTTAACT
Flanking Amino Acid:
SLLESLDQFTGDIIGSVMEL
Intron Amino Acid Position:
4063

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.2
27
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83
0.74
0.8
77
31.7
Minor 5ss
38.2
-1.3
2.8
50
46.3
Minor BPS
68.2
0.65
1.3
77.15
39.5

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685