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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99693180_99693410_R

Intron Information:

Intron Rank:
72
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99693180 - 99693410
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAA
U12 Branch Point Sequence:
CCTTTTGTAATT
Flanking Amino Acid:
AIKQSVEKTRRTLFKFMKKF
Intron Amino Acid Position:
3944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.1
77.9
38.6
Major BPS
62.3
0.31
1.4
63.7
43.9
Major PPT
70.4
0.46
1
71.1
38.7
Minor 5ss
41.4
-1
3
58.6
45.9
Minor BPS
51.8
0.14
2
69.97
42.5

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685