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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99695682_99696293_R

Intron Information:

Intron Rank:
68
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99695682 - 99696293
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCACTGTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
LIIQWRRLELNCWSVSLDNV
Intron Amino Acid Position:
3799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.4
0.66
0.9
76.3
37.4
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685