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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99699953_99700446_R

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99699953 - 99700446
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATCT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATTGTATAATA
Flanking Amino Acid:
SLRLFRHLCQSIINEWDEQE
Intron Amino Acid Position:
3512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.8
Major BPS
80
0.75
1
78.6
31
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
46.1
-0.4
2.9
66.5
44.4
Minor BPS
52.4
0.07
2
69.14
37.5

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685