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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99701144_99701348_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99701144 - 99701348
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGCT
5'SS Class:
major
3'SS Sequence:
TATTTCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TATTTCTTAACA
Flanking Amino Acid:
AVSNYIHPHLRLLQERMQRL
Intron Amino Acid Position:
3279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
37.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.6
0.71
0.9
77.8
35
Minor 5ss
38.6
-1.3
3.4
57.4
46.8
Minor BPS
86.5
1.14
0.9
88.38
28

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685