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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99701981_99702078_R

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99701981 - 99702078
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAACA
5'SS Class:
major
3'SS Sequence:
CCTTTGTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCTAT
U12 Branch Point Sequence:
TATGTGTGAGCT
Flanking Amino Acid:
NLAVASTADFRYTDSRLQGI
Intron Amino Acid Position:
3115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
68.9
35.3
Major BPS
58.7
0.22
1.5
58.5
47.9
Major PPT
81.3
0.7
0.8
72.7
37.6
Minor 5ss
39.9
-1.1
2.7
50.5
45.4
Minor BPS
43.2
-0.4
2.3
65.44
45

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685