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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99702294_99702426_R

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99702294 - 99702426
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGTTTC
5'SS Class:
major
3'SS Sequence:
TCTCTTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CATCTCTTAATT
Flanking Amino Acid:
SKSYLNCSMKGPGILTRAVF
Intron Amino Acid Position:
3044

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
74.5
36.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
75.5
0.57
0.9
74.7
33.8
Minor 5ss
40
-1.1
3
53.4
43.8
Minor BPS
70.6
0.72
1.2
78.1
38.4

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685