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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99702598_99703503_R

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99702598 - 99703503
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTATCCTCAACT
Flanking Amino Acid:
GMWHLVHLSEVSPEEMSILS
Intron Amino Acid Position:
2987

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
86.2
0.81
0.6
85.4
21.9
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
80.7
1.04
1.4
93.76
33.6

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685