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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99704880_99706181_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99704880 - 99706181
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGATA
5'SS Class:
major
3'SS Sequence:
TTTCATATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATTT
Flanking Amino Acid:
KSLGRPLPFKDTLGMDCFSQ
Intron Amino Acid Position:
2797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
73.3
37.1
Major BPS
100
1.24
0.5
100
0
Major PPT
84.6
0.78
0.8
81.9
34
Minor 5ss
42
-0.9
3.1
57.3
47
Minor BPS
61
0.42
1.8
84.33
36.6

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685