Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99706834_99707543_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

99706834 - 99707543

Intron Length:

710

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TCTGTCCCATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

CATTACTAACCT

Flanking Amino Acid:

VALSDDDMHDILYCLLWRDR

Intron Amino Acid Position:

2705

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

76.1

34.8

Major BPS

76.8

0.67

0.9

75.9

Major PPT

0.52

0.9

71.2

34.5

Minor 5ss

32.1

-2

2.7

37.9

Minor BPS

48.3

-0

2.1

69.79

46.7

Associated Gene:

Gene:

MDN1

Ensembl Gene ID:

ENSAPLG00000000987

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001146

99667299 - 99757983

90685