Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99707678_99708217_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

99707678 - 99708217

Intron Length:

540

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGATTGA

5'SS Class:

major

3'SS Sequence:

CTCCAAACTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAG

U12 Branch Point Sequence:

TTTCTCCAAACT

Flanking Amino Acid:

ALRMSLDFRKDPGSYNSLPH

Intron Amino Acid Position:

2660

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.9

0.52

64.4

38.3

Major BPS

68.2

0.45

1.5

77.7

37.1

Major PPT

68.2

0.41

0.9

63.1

36.9

Minor 5ss

32.1

-2

3.1

40.4

45.8

Minor BPS

55.7

0.26

81.84

39.4

Associated Gene:

Gene:

MDN1

Ensembl Gene ID:

ENSAPLG00000000987

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001146

99667299 - 99757983

90685