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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99708328_99709321_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99708328 - 99709321
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTAATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
LLILLKSVSNRAVLFLDRER
Intron Amino Acid Position:
2623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.8
31.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81
0.7
0.9
79.3
37.6
Minor 5ss
35.5
-1.6
2.9
44.3
43.6
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685