Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99709455_99710037_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

99709455 - 99710037

Intron Length:

583

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTTCTG

5'SS Class:

major

3'SS Sequence:

TCTGCCTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAA

U12 Branch Point Sequence:

ATGTTGTCAATA

Flanking Amino Acid:

MIKLLQPSMTDEHVMPLDPR

Intron Amino Acid Position:

2579

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.58

1.1

65.7

45.6

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

81.8

0.72

0.8

72.9

37.4

Minor 5ss

36.8

-1.5

3.2

50.2

Minor BPS

47.4

-0.2

2.2

61.13

39.7

Associated Gene:

Gene:

MDN1

Ensembl Gene ID:

ENSAPLG00000000987

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001146

99667299 - 99757983

90685