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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99710152_99711131_R

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99710152 - 99711131
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTCTTCATCT
Flanking Amino Acid:
YLAKNLPQGLDLVQTQVEAG
Intron Amino Acid Position:
2541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
83.4
0.75
0.8
77.7
29.8
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
61
0.42
1.8
81.04
40.7

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685