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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99711353_99711617_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99711353 - 99711617
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAG
5'SS Class:
major
3'SS Sequence:
TTTTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTGGTCTTCACT
Flanking Amino Acid:
CLNRLNLKNDRTLPLTLQDL
Intron Amino Acid Position:
2467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
37.3
-1.4
3.1
47.3
48.3
Minor BPS
53.4
0.19
1.9
70.44
46.9

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685