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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99713715_99714345_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99713715 - 99714345
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTACCCTAAAT
Flanking Amino Acid:
VHSETKTAIPGSVSSLSPLL
Intron Amino Acid Position:
2351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.7
0.58
1
65.9
45.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
66.2
0.59
1.8
87.48
37.1

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685