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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99714555_99715669_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99714555 - 99715669
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTTGC
5'SS Class:
major
3'SS Sequence:
AAATATTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TATCTTGTAAAT
Flanking Amino Acid:
VPTITPHPNFRLFLSMDPVH
Intron Amino Acid Position:
2281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
62.2
39.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
63.6
0.31
1.1
58
46.2
Minor 5ss
34.1
-1.8
3
44.5
43.3
Minor BPS
48.8
-0
2
71.31
39.5

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685