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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99716840_99716987_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99716840 - 99716987
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACC
5'SS Class:
strong_major
3'SS Sequence:
GGCATGTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTAAATGAACT
Flanking Amino Acid:
TTELLGGFEQVDINRPWQRL
Intron Amino Acid Position:
2099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
81.2
30.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
68.9
0.43
1
60.2
44.8
Minor 5ss
36.4
-1.5
2.8
46.5
41.8
Minor BPS
49.2
0.02
1.9
72.4
43.5

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685