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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99720045_99721035_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99720045 - 99721035
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GTATCTTTACTT
Flanking Amino Acid:
KAGHWIVLDELNLASQSVLE
Intron Amino Acid Position:
1817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
85.2
0.79
0.7
84.2
23.7
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
64.2
0.52
1.6
77.22
39.7

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685