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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99721883_99723264_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99721883 - 99723264
Intron Length:
1382

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
TTTTCTTTTCCT
Flanking Amino Acid:
MGIDPFFIPRGPVLQRNSIT
Intron Amino Acid Position:
1706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.9
79.6
35.5
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
81.1
0.7
0.8
80.2
31.9
Minor 5ss
20.4
-3.4
3.9
31.7
42.9
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685