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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99725110_99726142_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99725110 - 99726142
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
GTGAAATGAATT
Flanking Amino Acid:
NPGGDFGKKELSPALRNRFT
Intron Amino Acid Position:
1521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
78.1
29.6
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
31.2
-2.2
3.3
42.9
44.7
Minor BPS
44.8
-0.3
1.9
61.16
41.9

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685