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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99727963_99728055_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99727963 - 99728055
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCTT
5'SS Class:
major
3'SS Sequence:
TTCCATTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTAATAACT
Flanking Amino Acid:
RPVRQRSNDQEESDNSRLFE
Intron Amino Acid Position:
1429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.6
40
Major BPS
100
1.24
0.5
100
0
Major PPT
76.6
0.6
0.8
72.6
31.7
Minor 5ss
42.6
-0.8
2.8
59.4
45.1
Minor BPS
60.3
0.4
1.9
83.09
37.2

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685