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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99728195_99729128_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99728195 - 99729128
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACCGTG
5'SS Class:
major
3'SS Sequence:
TGACTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCAATTAAAT
Flanking Amino Acid:
GEPVLLVGDTGCGKTTICQI
Intron Amino Acid Position:
1382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.3
58
47.1
Major BPS
100
1.24
0.5
100
0
Major PPT
82
0.72
0.9
76.7
37.2
Minor 5ss
45.1
-0.5
3.3
55.7
48.5
Minor BPS
57.9
0.32
1.9
81.82
38.4

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685