About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99731980_99732640_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99731980 - 99732640
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTGTACCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGCTTTTAAAT
Flanking Amino Acid:
LKDIVRVVSAGTHPVLIQGE
Intron Amino Acid Position:
1065

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.4
41.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.2
0.61
0.8
74.6
36
Minor 5ss
45
-0.5
2.5
51.3
45.4
Minor BPS
60.7
0.41
1.4
72.57
38.3

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685