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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99733743_99733918_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99733743 - 99733918
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
CSSIPRSLYEGFCLSFLTQL
Intron Amino Acid Position:
978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
76.8
31.6
Major BPS
100
1.24
0.5
100
0
Major PPT
87.6
0.85
0.6
88.2
21.6
Minor 5ss
31.6
-2.1
2.6
38
39.5
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685