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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99739451_99739956_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99739451 - 99739956
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
CAAACAATAATT
Flanking Amino Acid:
QQSDTADLLGGYKPVDNKLI
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
83.5
0.75
0.8
81.1
31
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
46.4
-0.1
1.9
61.44
41.8

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685