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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99744108_99745156_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
99744108 - 99745156
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGTCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TTGTACCAAATC
Flanking Amino Acid:
PNLEGRELSLRDLLNWCSRI
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.3
63.7
43
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
44.8
-0.6
3.2
65.4
45.8
Minor BPS
47.2
-0.2
2.1
63.84
41.9

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685