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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99746174_99746778_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99746174 - 99746778
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTAAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTATTTAAAT
Flanking Amino Acid:
APGFQFFATRRLFSCGGGWY
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78
38.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71
0.47
1
68.9
40.9
Minor 5ss
41.6
-0.9
3.2
56.7
47.6
Minor BPS
67.5
0.63
1.6
83.3
37.1

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685