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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99752062_99752146_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99752062 - 99752146
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTGGGTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCAGCTGAATT
Flanking Amino Acid:
NPEELMHFRLKLLEESQAQN
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
83
0.82
0.8
82
24.9
Major PPT
69.1
0.43
1.1
64.5
45.9
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
52.7
0.16
1.9
73.39
43.7

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685