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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99753573_99754201_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99753573 - 99754201
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CTTTCATATGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCTCTTTCATA
Flanking Amino Acid:
KLLADHPDVLPFALRYFKNT
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
67.4
44
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
67.8
0.4
1.1
68.8
35.5
Minor 5ss
37.9
-1.4
2.7
50.5
39.2
Minor BPS
64.2
0.44
1.7
74.34
38.4

Associated Gene:

Gene:
MDN1
Ensembl Gene ID:
ENSAPLG00000000987
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001146
99667299 - 99757983
90685