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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99759018_99760869_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99759018 - 99760869
Intron Length:
1852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTACG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTGTGTAATT
Flanking Amino Acid:
DGLDNGLAVPDNSAPNSTPA
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
64.1
41.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
92.3
0.95
0.6
87.9
22.3
Minor 5ss
29.4
-2.4
2.8
30.7
36.5
Minor BPS
55
0.24
2.3
82.98
39.3

Associated Gene:

Gene:
CASP8AP2
Ensembl Gene ID:
ENSAPLG00000002243
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002293
99758891 - 99777498
18608