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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99763484_99765905_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99763484 - 99765905
Intron Length:
2422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCTA
5'SS Class:
major
3'SS Sequence:
TTTGTATAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTGTATAAACA
Flanking Amino Acid:
KDEEISNLHQRLSEFPNHRS
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
63.1
42.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
71.4
0.48
1
67.3
42.1
Minor 5ss
32.6
-2
3.7
47.1
48.3
Minor BPS
52.4
0.07
2
71.68
40.7

Associated Gene:

Gene:
CASP8AP2
Ensembl Gene ID:
ENSAPLG00000002243
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002293
99758891 - 99777498
18608