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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99773848_99775520_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99773848 - 99775520
Intron Length:
1673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCTGTCTTAAAA
Flanking Amino Acid:
KKGEVVVSWTRNDDREILLE
Intron Amino Acid Position:
1968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
74.9
0.56
0.9
70
35.9
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
65.4
0.48
1.5
71.75
40.6

Associated Gene:

Gene:
CASP8AP2
Ensembl Gene ID:
ENSAPLG00000002243
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002293
99758891 - 99777498
18608