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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99805494_99813245_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99805494 - 99813245
Intron Length:
7752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTGTCTCACAT
Flanking Amino Acid:
SCPVQDRGHEVKLPFPVDQI
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.3
0.68
0.8
78.8
34.4
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
48.3
-0
2
72.8
44.1

Associated Gene:

Gene:
BACH2
Ensembl Gene ID:
ENSAPLG00000002486
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002507
99800935 - 99898774
97840