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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99880033_99898665_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
99880033 - 99898665
Intron Length:
18633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTTTTTAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.8
0.76
0.8
82.6
33.4
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
68.4
0.44
1.2
66.17
35.9

Associated Gene:

Gene:
BACH2
Ensembl Gene ID:
ENSAPLG00000002486
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002507
99800935 - 99898774
97840