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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_10000196_10001263_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10000196 - 10001263
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATGCACA
Flanking Amino Acid:
PSMVDLFNGEGLCAIHMVVM
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.6
42.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.5
0.62
1
72.9
42.2
Minor 5ss
30.2
-2.3
3.3
38.2
47
Minor BPS
44.8
-0.4
2.3
64.23
41.2

Associated Gene:

Gene:
NFKB1
Ensembl Gene ID:
ENSAPLG00000013878
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014534
9962245 - 10005442
43198
ENSAPLT00000024529
9962245 - 10005442
43198